2023

Journal articles

ref_biblio

Phong Quoc Nguyen, Sonia Huecas, Amna Asif-Laidin, Adrián Plaza-Pegueroles, Beatrice Capuzzi, et al.. Structural basis of Ty1 integrase tethering to RNA polymerase III for targeted retrotransposon integration. Nature Communications, 2023, 14 (1), pp.1729. ⟨10.1038/s41467-023-37109-4⟩. ⟨hal-04056067⟩

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Conference papers

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Zahra Marouf, Paloma Fernandez Varela, Carine Tellier, Matthieu Glousieau, Nelly Morellet, et al.. Molecular bases of the specific recognition of tRNA by cyclodipeptide synthases: Use of RNA microhelices to mimick tRNA acceptor stem. Journée ED ITFA, ED ITFA, Jun 2023, Orsay, France. ⟨hal-04397018⟩

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Poster communications

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Zahra Marouf, Paloma Fernandez Varela, Carine Tellier, Matthieu Glousieau, Pierre Legrand, et al.. Molecular basis of the specific recognition of tRNA substrates by cyclodipeptide synthases explored using RNA microhelices. Congrès BSI, Nov 2023, Marseille, France. ⟨hal-04397161⟩

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2022

Journal articles

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Anastasia Barkova, Indranil Adhya, Christine Conesa, Amna Asif-Laidin, Amandine Bonnet, et al.. A proteomic screen of Ty1 integrase partners identifies the protein kinase CK2 as a regulator of Ty1 retrotransposition. Mobile DNA, 2022, 13, pp.26. ⟨10.1186/s13100-022-00284-0⟩. ⟨hal-04258718⟩

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Conference papers

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Zahra Marouf, Paloma Fernandez Varela, Carine Tellier, Matthieu Glousieau, Nelly Morellet, et al.. Deciphering the interactions of Cyclodipeptide Synthases with their shortened tRNA substrates by NMR, X-ray crystallography and biophysical approaches. Journée BSI@Paris-Saclay, Réseau BSI@Paris-Saclay, Nov 2022, Gif-sur-Yvette, France. ⟨hal-04396986⟩

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Poster communications

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Zahra Marouf, Paloma Fernandez Varela, Carine Tellier, Matthieu Glousieau, Jérôme Séguin, et al.. Structural and functional studies of cyclodipeptide synthases with RNA microhelices mimicking their tRNA susbtrates.. 33ème édition de la Conférence Européenne de Cristallographie (ECM33), Aug 2022, Versailles, France. ⟨hal-04397149⟩

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2021

Journal articles

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Phong Quoc Nguyen, Christine Conesa, Elise Rabut, Gabriel Bragagnolo, Célia Gouzerh, et al.. Ty1 integrase is composed of an active N-terminal domain and a large disordered C-terminal module dispensable for its activity $in\ vitro$. Journal of Biological Chemistry, 2021, 297 (4), pp.101093. ⟨10.1016/j.jbc.2021.101093⟩. ⟨hal-03402697⟩

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Anastasia Croitoru, Morgan Babin, Hannu Myllykallio, Muriel Gondry, Alexey Aleksandrov. Cyclodipeptide synthases of the NYH subfamily recognize tRNA using an α-helix enriched with positive residues. Biochemistry, 2021, 60 (1), pp.64-76. ⟨10.1021/acs.biochem.0c00761⟩. ⟨hal-03084339⟩

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Poster communications

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Zahra Marouf, Nelly Morellet, Carine Tellier, Matthieu Glousieau, Eric Jacquet, et al.. Structural studies of cyclodipeptide synthases with RNA microhelices mimicking their natural tRNA susbtrates. congrès BSI, Nov 2021, Gif-sur-Yvette, France. ⟨hal-04397035⟩

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2020

Journal articles

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Gabrielle Bourgeois, Jérôme Seguin, Morgan Babin, Muriel Gondry, Yves Mechulam, et al.. Structural basis of the interaction between cyclodipeptide synthases and aminoacylated tRNA substrates. RNA (New York, N.Y.), 2020, ⟨10.1261/rna.075184.120⟩. ⟨hal-02907478⟩

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Amna Asif-Laidin, Christine Conesa, Amandine Bonnet, Camille Grison, Indranil Adhya, et al.. A small targeting domain in Ty1 integrase is sufficient to direct retrotransposon integration upstream of tRNA genes. EMBO Journal, 2020, 39 (17), pp.e104337. ⟨10.15252/embj.2019104337⟩. ⟨hal-03066142⟩

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Camille Grison, Indranil Adhya, Rachid Menouni, Hélène Fayol, Noé Palmic, et al.. A small targeting domain in Ty1 integrase is sufficient to direct retrotransposon integration upstream of tRNA genes. EMBO Journal, 2020, pp.e104337. ⟨10.15252/embj.2019104337⟩. ⟨hal-02903063⟩

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Fabien Le Chevalier, Isabelle Correia, Lucrèce Matheron, Morgan Babin, Mireille Moutiez, et al.. In vivo characterization of the activities of novel cyclodipeptide oxidases: new tools for increasing chemical diversity of bioproduced 2,5-diketopiperazines in Escherichia coli. Microbial Cell Factories, 2020, 19 (1), pp.178. ⟨10.1186/s12934-020-01432-y⟩. ⟨hal-02944247⟩

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Nicolas Canu, Mireille Moutiez, Pascal Belin, Muriel Gondry. Cyclodipeptide synthases: a promising biotechnological tool for the synthesis of diverse 2,5-diketopiperazines. Natural Product Reports, 2020, ⟨10.1039/c9np00036d⟩. ⟨hal-02415937⟩

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Nicolas Canu, Carine Tellier, Morgan Babin, Robert Thai, Inès Ajel, et al.. Flexizyme-aminoacylated shortened tRNAs demonstrate that only the aminoacylated acceptor arms of the two tRNA substrates are required for cyclodipeptide synthase activity. Nucleic Acids Research, 2020, 48 (20), ⟨10.1093/nar/gkaa903⟩. ⟨hal-02978046⟩

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2019

Journal articles

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Pavlina Dubois, Isabelle Correia, Fabien Le Chevalier, Steven Dubois, Isabelle Jacques, et al.. Reprogramming Escherichia coli for the production of prenylated indole diketopiperazine alkaloids. Scientific Reports, 2019, 9 (1), pp.9208. ⟨10.1038/s41598-019-45519-y⟩. ⟨hal-03982770⟩

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Jerzy Witwinowski, Mireille Moutiez, Matthieu Coupet, Isabelle Correia, Pascal Belin, et al.. Study of bicyclomycin biosynthesis in Streptomyces cinnamoneus by genetic and biochemical approaches. Scientific Reports, 2019, 9 (1), pp.20226. ⟨10.1038/s41598-019-56747-7⟩. ⟨hal-02431235⟩

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Pavlina Dubois, Isabelle Correia, Fabien Le Chevalier, Steven Dubois, Isabelle Jacques, et al.. Author Correction: Reprogramming Escherichia coli for the production of prenylated indole diketopiperazine alkaloids. Scientific Reports, 2019, 9 (1), pp.15009. ⟨10.1038/s41598-019-51404-5⟩. ⟨hal-02321505⟩

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2018

Journal articles

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Emmanuelle Schmitt, Gabrielle Bourgeois, Muriel Gondry, Alexey Aleksandrov. Cyclization Reaction Catalyzed by Cyclodipeptide Synthases Relies on a Conserved Tyrosine Residue. Scientific Reports, 2018, 8 (1), pp.7031. ⟨10.1038/s41598-018-25479-5⟩. ⟨hal-01974171⟩

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Gabrielle Bourgeois, Jérôme Seguin, Morgan Babin, Pascal Belin, Mireille Moutiez, et al.. Structural basis for partition of the cyclodipeptide synthases into two subfamilies. Journal of Structural Biology, 2018, 203 (1), pp.17-26. ⟨10.1016/j.jsb.2018.03.001⟩. ⟨hal-01969469⟩

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Nicolas Canu, Pascal Belin, Robert Thai, Isabelle Correia, Olivier Lequin, et al.. Incorporation of non-canonical amino acids into 2,5-diketopiperazines by cyclodipeptide synthases. Angewandte Chemie International Edition, 2018, 57 (12), pp.3118-3122. ⟨10.1002/anie.201712536⟩. ⟨cea-01988447⟩

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Muriel Gondry, Isabelle Jacques, Robert Thai, Morgan Babin, Nicolas Canu, et al.. A Comprehensive Overview of the Cyclodipeptide Synthase Family Enriched with the Characterization of 32 New Enzymes. Frontiers in Microbiology, 2018, 9, pp.46. ⟨10.3389/fmicb.2018.00046⟩. ⟨cea-01988448⟩

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