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D.C.Thomas (Boraginaceae), the first chloroplast genome belonging to the Glandora genus | Carvalho Leonardo I, Alberti A, Denoeud F, Barreto Crespo MT, Capelo J and Bustos Gaspar F | | | | Discovery and Enzymatic Screening of Genome-Mined Microbial Levanases to Produce Second-Generation beta-(2,6)-Fructooligosaccharides: Catalytic Properties | Chen L, Hill A, Petit JL, Mariage A, de Berardinis V and Karboune S | | | | Impacts of microplastics and the associated plastisphere on physiological, biochemical, genetic expression and gut microbiota of the filter-feeder amphioxus | Cheng J, Meistertzheim AL, Leistenschneider D, Philip L, Jacquin J, Escande ML, Barbe V, Ter Halle A, Chapron L, Lartaud F, Bertrand S, Escriva H and Ghiglione JF | | | | In vitro Applications of the Terpene Mini-Path 2.0 | Couillaud J, Amouric A, Courvoisier-Dezord E, Leydet L, Schweitzer N, Rosso MN, Hage H, Loussouarn-Yvon M, Vincentelli R, Petit JL, de Berardinis V, Attolini M, Maresca M, Duquesne K and Iacazio G | | | | A paralog of Pcc1 is the fifth core subunit of the KEOPS tRNA-modifying complex in Archaea | Daugeron MC, Missoury S, Da Cunha V, Lazar N, Collinet B, van Tilbeurgh H and Basta T | | | | Fluorescence Detection of the Persistent Organic Pollutant Chlordecone in Water at Environmental Concentrations | Della-Negra O, Kouassi AE, Dutasta JP, Saaidi PL and Martinez A | | | | Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies | Dore H, Guyet U, Leconte J, Farrant GK, Alric B, Ratin M, Ostrowski M, Ferrieux M, Brillet-Gueguen L, Hoebeke M, Siltanen J, Le Corguille G, Corre E, Wincker P, Scanlan DJ, Eveillard D, Partensky F and Garczarek L | | | | Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae | Dorrell RG, Kuo A, Fussy Z, Richardson EH, Salamov A, Zarevski N, Freyria NJ, Ibarbalz FM, Jenkins J, Pierella Karlusich JJ, Stecca Steindorff A, Edgar RE, Handley L, Lail K, Lipzen A, Lombard V, McFarlane J, Nef C, Novak Vanclova AM, Peng Y, Plott C, Potvin M, Vieira FRJ, Barry K, de Vargas C, Henrissat B, Pelletier E, Schmutz J, Wincker P, Dacks JB, Bowler C, Grigoriev IV and Lovejoy C | | | | Silent gene clusters encode magnetic organelle biosynthesis in a non-magnetotactic phototrophic bacterium | Dziuba MV, Paulus A, Schramm L, Awal RP, Posfai M, Monteil CL, Fouteau S, Uebe R and Schuler D | | | | Native amine dehydrogenases can catalyze the direct reduction of carbonyl compounds to alcohols in the absence of ammonia | Fossey-Jouenne A, Ducrot L, Jongkind E, Elis‚e E, Zaparucha A, Grogan G, Paul C and Vergne-Vaxelaire C | Frontiers in Catalysis 3 (), 1105948, 2023 | | | Plankton biogeography in the 21st century and impacts of climate change: advances through genomics | Fr‚mont P, Gehlen M and Jaillon O | | | | Mirusviruses link herpesviruses to giant viruses | Ga‹a M, Meng L, Pelletier E, Forterre P, Vanni C, Fernandez-Guerra A, Jaillon O, Wincker P, Ogata H, Krupovic M and Delmont TO | | | | Controlled E. coli aggregation mediated by DNA and XNA hybridization | Gasse C, Srivastava P, Shepers G, Jose J, Hollenstein M, Marliere P and Herdewijn P | Chembiochem (), e202300191, 2023 | | | Mission Tara Microplastics: a holistic set of protocols and data resources for the field investigation of plastic pollution along the land-sea continuum in Europe | Ghiglione JF, Barbe V, Bruzaud S, Burgaud G, Cachot J, Eyheraguibel B, Lartaud F, Ludwig W, Meistertzheim AL, Paul-Pont I, Pesant S, Ter Halle A, Thiebeauld O and Mission Tara Microplastics c | | | | Dynamics of gene loss following ancient whole-genome duplication in the cryptic Paramecium complex | Gout JF, Hao Y, Johri P, Arnaiz O, Doak TG, Bhullar S, Couloux A, Guerin F, Malinsky S, Potekhin A, Sawka N, Sperling L, Labadie K, Meyer E, Duharcourt S and Lynch M | | | | The Replicative DnaE Polymerase of Bacillus subtilis Recruits the Glycolytic Pyruvate Kinase (PykA) When Bound to Primed DNA Templates | Holland A, Pitoulias M, Soultanas P and Janniere L | Life (Basel) 13 (4), , 2023 | | | Pan-Arctic plankton community structure and its global connectivity | Ibarbalz F, Henry N, Mah‚ F, Ardyna M, Zingone A, Scalco E, Lovejoy C, Fabien L, Jaillon O, Iudicone D, Malviya S, Sullivan M, Chaffron S, Karsenti E, Babin M, Boss E, Wincker P, Zinger L, de Vargas C and Karp-Boss L | | | | A novel binary pesticidal protein from Chryseobacterium arthrosphaerae controls western corn rootworm by a different mode of action to existing commercial pesticidal proteins | Jabeur R, Guyon V, Toth S, Pereira AE, Huynh MP, Selmani Z, Boland E, Bosio M, Beuf L, Clark P, Vallenet D, Achouak W, Audiffrin C, Torney F, Paul W, Heulin T, Hibbard BE, Toepfer S and Sallaud C | | | | Synergistic activation of RARbeta and RARgamma nuclear receptors restores cell specialization during stem cell differentiation by hijacking RARalpha-controlled programs | Koshy A, Mathieux E, Studer F, Bramoulle A, Lieb M, 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| | Analysis of the P.ÿlividus sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes | Marl‚taz F, Couloux A, Poulain J, Labadie K, Da Silva C, Mangenot S, Noel B, Poustka AJ, Dru P, Pegueroles C, Borra M, Lowe EK, Lhomond G, Besnardeau L, Le Gras S, Ye T, Gavriouchkina D, Russo R, Costa C, Zito F, Anello L, Nicosia A, Ragusa MA, Pascual M, Molina MD, Chessel A, Di Carlo M, Turon X, Copley RR, Exposito J-Y, Martinez P, Cavalieri V, Ben Tabou de Leon S, Croce J, Oliveri P, Matranga V, Di Bernardo M, Morales J, Cormier P, GeneviŠve A-M, Aury JM, Barbe V, Wincker P, Arnone MI, Gache C and Lepage T | | | | Interspecific introgression patterns reveal the origins of worldwide cultivated bananas in New Guinea | Martin G, Cottin A, Baurens FC, Labadie K, Hervouet C, Salmon F, Paulo-de-la-Reberdiere N, Van den Houwe I, Sardos J, Aury JM, D'Hont A and Yahiaoui N | | | | A robust approach to estimate relative phytoplankton cell abundances from 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Weinstock J, Rajic Sikanjic P, Mashkour M, Shingiray I, Aury JM, Perdereau A, Alquraishi S, Alfarhan AH, Al-Rasheid KAS, Trbojevic Vukicevic T, Buric M, Sauer E, Lucas M, Brenner-Coltrain J, Bozell JR, Thornhill CA, Monagle V, Perri A, Newton C, Hall WE, Conver JL, Le Roux P, Buckser SG, Gabe C, Belardi JB, Barron-Ortiz CI, Hart IA, Ryder C, Sponheimer M, Shapiro B, Southon J, Hibbs J, Faulkner C, Outram A, Patterson Rosa L, Palermo K, Sole M, William A, McCrory W, Lindgren G, Brooks S, Eche C, Donnadieu C, Bouchez O, Wincker P, Hodgins G, Trabert S, Bethke B, Roberts P, Jones EL, Running Horse Collin Y and Orlando L | | | | Tracking population structure and phenology through time using ancient genomes from waterlogged white oak wood | Wagner S, Seguin-Orlando A, Leple JC, Leroy T, Lalanne C, Labadie K, Aury JM, Poirier S, Wincker P, Plomion C, Kremer A and Orlando L | | | | Priorities for ocean microbiome research | Abreu A, Bourgois E, Gristwood A, Trouble R, Acinas SG, Bork P, Boss E, Bowler C, Budinich M, Chaffron S, de Vargas C, Delmont TO, Eveillard D, Guidi L, Iudicone D, Kandels S, Morlon H, Lombard F, Pepperkok R, Karlusich JJP, Piganeau G, Regimbeau A, Sommeria-Klein G, Stemmann L, Sullivan MB, Sunagawa S, Wincker P, Zablocki O, Arendt D, Bilic J, Finn R, Heard E, Rouse B, Vamathevan J, Casotti R, Cancio I, Cunliffe M, Kervella AE, Kooistra W, Obst M, Pade N, Power DM, Santi I, Tsagaraki TM, Vanaverbeke J, Tara Ocean F, Tara O, European Mol Biol Lab E and European Marine Biol Resource C | | | | Providing a phylogenetic framework for trait-based analyses in brown algae: Phylogenomic tree inferred from 32 nuclear protein-coding sequences | Akita S, Vieira C, Hanyuda T, Rousseau F, Cruaud C, Couloux A, Heesch S, Cock JM and Kawai H | | | | "The complete genome sequence of elite bread wheat cultivar, ""Sonmez""" | Akpinar BA, Leroy P, Watson-Haigh N, Baumann U, Barbe V and Budak H | | | | Postglacial species arrival and diversity buildup of northern ecosystems took millennia | Alsos IG, Rijal DP, Ehrich D, Karger DN, Yoccoz NG, Heintzman PD, Brown AG, Lammers Y, Pellissier L, Alm T, Brathen KA, Coissac E, Merkel MKF, Alberti A, Denoeud F, Bakke J and PhyloNorway C | | | | Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding | Aury JM, Engelen S, Istace B, Monat C, Lasserre-Zuber P, Belser C, Cruaud C, Rimbert H, Leroy P, Arribat S, Dufau I, Bellec A, Grimbichler D, Papon N, Paux E, Ranoux M, Alberti A, Wincker P and Choulet F | | | | Structure and Mutation of the Native Amine Dehydrogenase MATOUAmDH2 | Bennett M, Ducrot L, Vergne-Vaxelaire C and Grogan G | | | | Epigenomic and structural events preclude recombination in Brassica napus | Boideau F, Richard G, Coriton O, Huteau V, Belser C, Deniot G, Eber F, Falentin C, de Carvalho JF, Gilet M, Lode-Taburel M, Maillet L, Morice J, Trotoux G, Aury JM, Chevre AM and Rousseau-Gueutin M | | | | Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection | Canaguier A, Guilbaud R, Denis E, Magdelenat G, Belser C, Istace B, Cruaud C, Wincker P, Le Paslier MC, Faivre-Rampant P and Barbe V | | | | Metatranscriptomics of cheese microbial communities: Efficiency of RNA extraction from various cheese types and of mRNA enrichment | Carbonne C, Labadie K, Cruaud C, Brun E, Barbe V and Monnet C | | | | Chelonus inanitus bracovirus encodes lineage-specific proteins and truncated immune IkappaB-like factors | Cerqueira de Araujo A, Josse T, Sibut V, Urabe M, Asadullah A, Barbe V, Nakai M, Huguet E, Periquet G and Drezen JM | | | | A Methylotrophic Bacterium Growing with the Antidiabetic Drug Metformin as Its Sole Carbon, Nitrogen and Energy Source | Chaignaud P, Gruffaz C, Borreca A, Fouteau S, Kuhn L, Masbou J, Rouy Z, Hammann P, Imfeld G, Roche D and Vuilleumier S | | | | Biodegradability under marine conditions of bio-based and petroleum-based polymers as substitutes of conventional microparticles | Cheng J, Eyheraguibel B, Jacquin J, Pujo-Pay M, Conan P, Barbe V, Hoypierres J, Deligey G, Halle AT, Bruzaud S, Ghiglione J-F and Meistertzheim A-L | | | | Sex in the city: Uncovering sex-specific management of equine resources from prehistoric times to the Modern Period in France | Clavel B, Lepetz S, Chauvey L, Schiavinato S, Tonasso-Calviere L, Liu XX, Fages A, Khan N, Seguin-Orlando A, Sarkissian CD, Clavel P, Estrada O, Alioglu D, Gaunitz C, Aury JM, Barme M, Bodu P, Olive M, Bignon-Lau O, Castel JC, Boudadi-Maligne M, Boulbes N, Bourgois A, Decanter F, Foucras S, Frere S, Gardeisen A, Jouanin G, Mela C, Morand N, Espinet AN, Perdereau A, Putelat O, Riviere J, Robin O, Salin M, Valenzuela-Lamas S, Vallet C, Yvinec JH, Wincker P and Orlando L | | | | Evidence of coupled autotrophy and heterotrophy on plastic biofilms and its influence on surrounding seawater | Conan P, Philip L, Ortega-Retuerta E, Odobel C, Duran C, Pandin C, Giraud C, Meistertzheim AL, Barbe V, Ter Hall A, Pujo-Pay M and Ghiglione JF | | | | Patterns of eukaryotic diversity from the surface to the deep-ocean sediment | Cordier T, Angeles IB, Henry N, Lejzerowicz F, Berney C, Morard R, Brandt A, Cambon-Bonavita MA, Guidi L, Lombard F, Arbizu PM, Massana R, Orejas C, Poulain J, Smith CR, Wincker P, Arnaud-Haond S, Gooday AJ, de Vargas C and Pawlowski J | | | | Selection drives convergent gene expression changes during transitions to co-sexuality in haploid sexual systems | Cossard GG, Godfroy O, Nehr Z, Cruaud C, Cock JM, Lipinska AP and Coelho SM | | | | In vitro Applications of the Terpene Mini-Path 2.0 | Couillaud J, Amouric A, Courvoisier-Dezord E, Leydet L, Schweitzer N, Rosso MN, Hage H, Loussouarn-Yvon M, Vincentelli R, Petit JL, de Berardinis V, Attolini M, Maresca M, Duquesne K and Iacazio G | | | | The expanding Asgardÿarchaea and their elusive relationships with Eukarya | Da Cunha V, Ga‹a M and Forterre P | | | | Giant Viruses Encode Actin-Related Proteins | Da Cunha V, Gaia M, Ogata H, Jaillon O, Delmont TO and Forterre P | | | | Genomic differentiation of three pico-phytoplankton species in the Mediterranean Sea | Da Silva O, Ayata SD, Ser-Giacomi E, Leconte J, Pelletier E, Fauvelot C, Madoui MA, Guidi L, Lombard F and Bittner L | | | | Genomic Instability in Somatic Hybridization between Poncirus and Citrus Species Aiming to Create New Rootstocks | Dambier D, Barantin P, Boulard G, Costantino G, Mournet P, Perdereau A, Morillon R and Ollitrault P | | | | A roadmap for the functional annotation of protein families: a community perspective | de Crecy-Lagard V, Amorin de Hegedus R, Arighi C, Babor J, Bateman A, Blaby I, Blaby-Haas C, Bridge AJ, Burley SK, Cleveland S, Colwell LJ, Conesa A, Dallago C, Danchin A, de Waard A, Deutschbauer A, Dias R, Ding Y, Fang G, Friedberg I, Gerlt J, Goldford J, Gorelik M, Gyori BM, Henry C, Hutinet G, Jaroch M, Karp PD, Kondratova L, Lu Z, Marchler-Bauer A, Martin MJ, McWhite C, Moghe GD, Monaghan P, Morgat A, Mungall CJ, Natale DA, Nelson WC, O'Donoghue S, Orengo C, O'Toole KH, Radivojac P, Reed C, Roberts RJ, Rodionov D, Rodionova IA, Rudolf JD, Saleh L, Sheynkman G, Thibaud-Nissen F, Thomas PD, Uetz P, Vallenet D, Carter EW, Weigele PR, Wood V, Wood-Charlson EM and Xu J | | | | A roadmap for the functional annotation of protein families: a community perspective | de Crecy-Lagard V, de Hegedus RA, Arighi C, Babor J, Bateman A, Blaby I, Blaby-Haas C, Bridge AJ, Burley SK, Cleveland S, Colwell LJ, Conesa A, Dallago C, Danchin A, de Waard A, Deutschbauer A, Dias R, Ding YS, Fang G, Friedberg I, Gerlt J, Goldford J, Gorelik M, Gyori BM, Henry C, Hutinet G, Jaroch M, Karp PD, Kondratova L, Lu ZY, Marchler-Bauer A, Martin MJ, McWhite C, Moghe GD, Monaghan P, Morgat A, Mungall CJ, Natale DA, Nelson WC, O'Donoghue S, Orengo C, O'Toole KH, Radivojac P, Reed C, Roberts RJ, Rodionov D, Rodionova IA, Rudolf JD, Saleh L, Sheynkman G, Thibaud-Nissen F, Thomas PD, Uetz P, Vallenet D, Carter EW, Weigele PR, Wood V, Wood-Charlson EM and Xu J | | | | Plankton Planet: A frugal, cooperative measure of aquatic life at the planetary scale | de Vargas C, Le Bescot N, Pollina T, Henry N, Romac S, Colin S, Ha‰ntjens N, Carmichael M, Berger C, Le Guen D, Decelle J, Mah‚ F, Poulain J, Malpot E, Beaumont C, Hardy M, Guiffant D, Probert I, Gruber DF, Allen AE, Gorsky G, Follows MJ, Pochon X, Troubl‚ R, Cael BB, Lombard F, Boss E, Prakash M, tPPct, Bazile R, Boss E, Bourdin G, Cael B, Casati R, Colin Sb, Vargas Cd, Gorsky G, Guiffant D, Haentjens N, Henry N, Larson A, Bescot NL, Lombard F, Mirambeau G, Moulin Cm, Oddone A, Prakash M, Prazuck C, Raimbault V, Trellu C and Trouble? R | | | | Access to the Syn diastereomers of cryptophane cages using HFIP | Della-Negra O, Cirillo Y, Brotin T, Dutasta JP, Saaidi PL, Chatelet B and Martinez A | | | | Genetic and biocatalytic basis of formate dependent growth of Escherichia coli strains evolved in continuous culture | Delmas VA, Perchat N, Monet O, Foure M, Darii E, Roche D, Dubois I, Pateau E, Perret A, Doring V and Bouzon M | | | | Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean | Delmont TO, Gaia M, Hinsinger DD, Fr‚mont P, Vanni C, Fernandez-Guerra A, Eren AM, Kourlaiev A, d'Agata L, Clayssen Q, Villar E, Labadie K, Cruaud C, Poulain J, Da Silva C, Wessner M, Noel B, Aury J-M, Sunagawa S, Acinas SG, Bork P, Karsenti E, Bowler C, Sardet C, Stemmann L, de Vargas C, Wincker P, Lescot M, Babin M, Gorsky G, Grimsley N, Guidi L, Hingamp P, Jaillon O, Kandels S, Iudicone D, Ogata H, Pesant S, Sullivan MB, Not F, Lee K-B, Boss E, Cochrane G, Follows M, Poulton N, Raes J, Sieracki M, Speich S, de Vargas C, Bowler C, Karsenti E, Pelletier E, Wincker P and Jaillon O | | | | Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean | Delmont TO, Pierella Karlusich JJ, Veseli I, Fuessel J, Eren AM, Foster RA, Bowler C, Wincker P and Pelletier E | | | | Genome wide association study of Escherichia coli bloodstream infection isolates identifies genetic determinants for the portal of entry but not fatal outcome | Denamur E, Condamine B, Esposito-Farese M, Royer G, Clermont O, Laouenan C, Lefort A, de Lastours V, Galardini M, Colibafi and Septicoli | | | | Diversity and ecological footprint of Global Ocean RNA viruses | Dominguez-Huerta G, Zayed AA, Wainaina JM, Guo JR, Tian FN, Pratama AA, Bolduc B, Mohssen M, Zablocki O, Pelletier E, Delage E, Alberti A, Aury JM, Carradec Q, da Silva C, Labadie K, Poulain J, Coordinators TO, Bowler C, Eveillard D, Guidi L, Karsenti E, Kuhn JH, Ogata H, Wincker P, Culley A, Chaffron S and Sullivan MB | | | | The banana genome hub: a community database for genomics in the Musaceae | Droc G, Martin G, Guignon V, Summo M, Semp‚r‚ G, Durant E, Soriano A, Baurens F-C, Cenci A, Breton C, Shah T, Aury J-M, Ge X-J, Harrison PH, Yahiaoui N, D?Hont A and Rouard M | | | | Expanding the substrate scope of native amine dehydrogenases through in silico structural exploration and targeted protein engineering | Ducrot L, Bennett M, Andr‚-Leroux G, Elis‚e E, Marynberg S, Fossey-Jouenne A, Zaparucha A, Grogan G and Vergne-Vaxelaire C | | | | Silent gene clusters encode magnetic organelle biosynthesis in a non-magnetotactic phototrophic bacterium | Dziuba MV, Paulus A, Schramm L, Awal RP, Posfai M, Monteil CL, Fouteau S, Uebe R and Schuler D | | | | Photobiocatalytic Oxyfunctionalization with High Reaction Rate using a Baeyer-Villiger Monooxygenase from Burkholderia xenovorans in Metabolically Engineered Cyanobacteria | Erdem E, Malihan-Yap L, Assil-Companioni L, Grimm H, Barone GD, Serveau-Avesque C, Amouric A, Duquesne K, de Berardinis V, Allahverdiyeva Y, Alphand V and Kourist R | | | | Complete Genome Sequence of Tepidibacter sp. 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